Miami Water Quality: Biscayne Aquifer, Saltwater Intrusion, and PFAS at Military Sites

Miami skyline with Biscayne Bay, above the shallow aquifer that supplies the region's drinking water

South Florida has a water problem that no other major American metro faces quite the same way: the ocean is coming for its drinking water.

Miami-Dade County’s 2.8 million residents (and neighboring Broward and Palm Beach counties) depend on the Biscayne Aquifer — a shallow, porous limestone formation that sits just feet below the surface. It’s one of the most productive aquifers in the world, providing billions of gallons daily. It’s also one of the most vulnerable.

The Biscayne Aquifer is unconfined — meaning there’s no protective clay layer between the surface and the water table. Anything that goes on the ground can reach the aquifer quickly. And because it’s shallow and located at sea level, it’s uniquely susceptible to saltwater intrusion as sea levels rise.

Saltwater Intrusion: The Defining Threat

Saltwater intrusion has been a recognized problem in South Florida since the 1930s. The original drainage of the Everglades for development lowered the water table, allowing saltwater to migrate inland through the porous limestone.

The response was an elaborate system of canals, levees, and control structures managed by the South Florida Water Management District (SFWMD). These structures maintain freshwater head pressure in the aquifer to hold the saltwater interface at bay. It works — but it’s a constant balancing act.

Sea level rise is tilting that balance. Southeast Florida has experienced approximately 6 to 8 inches of sea level rise since the 1990s, and the rate is accelerating. Higher ocean levels increase the pressure driving saltwater inland. At the same time, more intense rainfall events (followed by longer dry spells) make water table management more volatile.

Miami-Dade Water and Sewer Department (WASD) has already had to relocate and deepen some wellfields in response to saltwater migration. The county monitors the saltwater interface continuously using a network of observation wells — and the trend is not in their favor.

Some projections suggest that by mid-century, portions of the Biscayne Aquifer currently used for public water supply may become too saline for cost-effective treatment. This isn’t a theoretical future problem — it’s an engineering and financial planning challenge that utilities are working on right now.

PFAS: Military Bases and Airports

South Florida has significant PFAS contamination sources:

In a confined aquifer with protective clay layers, PFAS contamination might stay relatively localized. In the Biscayne Aquifer — with its high permeability and rapid groundwater flow — contamination can spread across miles relatively quickly.

Florida has been slower than some states to establish state-level PFAS drinking water standards, relying primarily on EPA’s federal MCLs finalized in 2024. But UCMR 5 testing has confirmed PFAS detection in South Florida water systems, and treatment upgrades will be necessary to meet the 2029 compliance deadline.

Surface Water Quality and Everglades Restoration

Miami’s water story is inseparable from the Everglades. The vast wetland system that historically covered much of South Florida functioned as a natural recharge area for the Biscayne Aquifer — filtering water through sawgrass marshes and slowly replenishing groundwater.

Development, agriculture (particularly sugar cane farming in the Everglades Agricultural Area), and drainage have dramatically reduced the Everglades’ natural water filtration capacity. Nutrient pollution — especially phosphorus from agricultural runoff — has degraded water quality in the remaining wetlands and canals that feed aquifer recharge.

The Comprehensive Everglades Restoration Plan (CERP), authorized in 2000 with an estimated cost exceeding $20 billion, aims to restore more natural water flows to the Everglades while maintaining flood control and water supply. Progress has been slow, but key projects including stormwater treatment areas and reservoir construction are advancing.

The connection is direct: healthier Everglades = better aquifer recharge = more resilient drinking water supply for South Florida.

Infrastructure and Treatment

Miami-Dade WASD operates three major water treatment plants serving the county. Treatment includes lime softening, filtration, and disinfection. The utility has been investing in upgrades to address emerging contaminants, including PFAS and disinfection byproducts.

The county also operates one of the world’s largest ocean outfalls for treated wastewater — though federal regulations are requiring a transition to deep well injection and increased water reuse. This is actually a water supply opportunity: recycled water can supplement the potable supply and help maintain aquifer levels.

South Florida utilities are increasingly exploring:

What Miami-Dade Residents Can Do

The Bottom Line

Miami’s water situation is fundamentally different from any other major American city. The Biscayne Aquifer is simultaneously one of the most productive and most vulnerable drinking water sources in the country. Sea level rise, PFAS contamination, and development pressure create an existential challenge that will require billions of dollars and decades of sustained investment to address.

The good news: South Florida’s water utilities are among the most innovative in the country at developing alternative supply sources. The bad news: the physics of rising seas and porous limestone don’t care about innovation timelines.

If you’re concerned about your water quality, a certified water treatment professional can test your water and recommend the right treatment approach for your home.